MmuINT0179773 @ mm9

Intron Retention

Gene

ENSMUSG00000048897 | Zfp710

Description

zinc finger protein 710 [Source:MGI Symbol;Acc:MGI:1921747]

Coordinates

chr7:87230837-87231494:+

Coord C1 exon

chr7:87230837-87231028

Coord A exon

chr7:87231029-87231319

Coord C2 exon

chr7:87231320-87231494

Length

291 bp

Sequences

Splice sites

5' ss Seq

AAGGTATGG

5' ss Score

9.26

3' ss Seq

TGGTACCCTCCCTGTTCCAGGTG

3' ss Score

10.85

Exon sequences

Seq C1 exon

GGTGTGAAGGAGTTCAAGTGTGAGGTCTGTGGCCGGGAGTTCACGCTGCAGGCCAACATGAAGCGCCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTCGTGCAGAAGCAAACCCTCAAGACCCACATGATTGTGCACTCGCCTGTGAAGCCGTTCAAGTGCAAG

Seq A exon

GTATGGGACATTCCCGTGGCCCGCCTGGCCGCTAAGGGGGTGGAGCGAAGGGCCGGTGAGGGGCGGAGCCTTGGAACTGCTGAAGTGGTACTTCTTGGGGACTCGGAGAGGGGTGAACGCTGTGAGCTGCAGGTTCCACCGCAGGCCCCCAGCGAGCAGATGTTTTTATCTCATTCTGTGGTCTCAGAGGACCAGAGGACCAGAGGACGGGACAGCGTGCCGTGTGCGGTGGGGGCAGACTGGCCGGGGTGTCAGGTTCCTCATAGCCCTCTGGTACCCTCCCTGTTCCAG

Seq C2 exon

GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGTCATATGCACCTGCACGCAGGCAGCAAGCCATTCAAGTGCCCGTACTGCTCCAGCAAGTTCAACCTCAAGGGAAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCAGCCTGGACAGCCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000048897-Zfp710:NM_175433:3

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.000

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=PD(56.0=21.9),PF054957=zf-CHY=PD(73.2=64.1),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6),PF069576=COPI_C=PU(40.4=71.9)

A:

NA

C2:

PF134651=zf-H2C2_2=PD(26.9=11.9),PF069576=COPI_C=FE(50.9=100),PF0009621=zf-C2H2=WD(100=40.7)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000050577