HsaINT0188211 @ hg38
Intron Retention
Gene
ENSG00000140548 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr15:90073071-90074290:+
Coord C1 exon
chr15:90073071-90073262
Coord A exon
chr15:90073263-90074115
Coord C2 exon
chr15:90074116-90074290
Length
853 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
ACCGGGTTGATGTGTTCTAGGTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
GGCGTGAAGGAGTTCAAGTGCGAGGTGTGTGGCCGGGAGTTCACCCTACAGGCGAACATGAAGCGGCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTTGTACAGAAGCAGACTCTCAAGACCCACATGATTGTACACTCGCCCGTGAAGCCATTCAAATGCAAG
Seq A exon
GTACCCGGTCATCAGGCCCCGGGGCTGGGACCTCCCCGAGGGTGGTCTGGAATCAGCATGCCTGCAGCAGCTGTGGCCCACCAAGCGCCAGCCTGGCCAGTGCGGGCAAGAGGAGCCCCGGCTGGGTGAAACTTAGCCTGGGCTTTGGGGGTTGGGAGGGCAGGCGGGGATTCACATCCTGAAAGCTGCTGAAGTTGGGTTTTTCTGAGAGCTGGGGAGGGAGTGAAGGTCATGGTGCAGCCACAGAGAAAGGACCCCAGCCTGAGGGCTTAGTGCAGCTAGAGATCCAAGCCCTGGGTTTCTGATAAGTGCAGCTCAGAGAAAGTGGGGCAGACTCACAGGAGCAGTGACCCCCAATGGATGGCTTGTGTCCCTGTCTCTCGGGTGTCTGGGGTCACATGGAAAAGCATAAAGAGAGAACTGTCCATAAAGAACAGGATTCTGGGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGGGTGGATCATTTGAGGTAAGGAGTTCGAGACCAGCCTAGCCAATGTGGTGAAACCCCTTCTCTACTAAACATACAAAAAATTAGCTGGGCGTGGTGGCACGTGCCTGTAGTCCCAGCTACTCGGGAGACTAAGGCAGGAGAATCTCTTGAACCCAGGAGGCAGAAGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGACAACAGAGTGAGAGTCTGTCTCAAAAAAAAAACAAAAAAAAAAAACAAAAGAATAGGATTCTGGCCCAGCCATAGAGGTGGGAGTGGGCTGGGGTCCGGGGAAAGCAGGTTCCCCACAGGCTCAGGACACCGGGTTGATGTGTTCTAG
Seq C2 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140548:ENST00000268154:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAAGGAGTTCAAGTGCGA
R:
ATGACGCCATGCTTGACCTTC
Band lengths:
342-1195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains