HsaINT0188211 @ hg19

Intron Retention

Gene

ENSG00000140548 | ZNF710

Description

zinc finger protein 710 [Source:HGNC Symbol;Acc:25352]

Coordinates

chr15:90616303-90617522:+

Coord C1 exon

chr15:90616303-90616494

Coord A exon

chr15:90616495-90617347

Coord C2 exon

chr15:90617348-90617522

Length

853 bp

Sequences

Splice sites

5' ss Seq

AAGGTACCC

5' ss Score

9.16

3' ss Seq

ACCGGGTTGATGTGTTCTAGGTG

3' ss Score

8.62

Exon sequences

Seq C1 exon

GGCGTGAAGGAGTTCAAGTGCGAGGTGTGTGGCCGGGAGTTCACCCTACAGGCGAACATGAAGCGGCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGCCACATCTGCTTCAAGACCTTTGTACAGAAGCAGACTCTCAAGACCCACATGATTGTACACTCGCCCGTGAAGCCATTCAAATGCAAG

Seq A exon

GTACCCGGTCATCAGGCCCCGGGGCTGGGACCTCCCCGAGGGTGGTCTGGAATCAGCATGCCTGCAGCAGCTGTGGCCCACCAAGCGCCAGCCTGGCCAGTGCGGGCAAGAGGAGCCCCGGCTGGGTGAAACTTAGCCTGGGCTTTGGGGGTTGGGAGGGCAGGCGGGGATTCACATCCTGAAAGCTGCTGAAGTTGGGTTTTTCTGAGAGCTGGGGAGGGAGTGAAGGTCATGGTGCAGCCACAGAGAAAGGACCCCAGCCTGAGGGCTTAGTGCAGCTAGAGATCCAAGCCCTGGGTTTCTGATAAGTGCAGCTCAGAGAAAGTGGGGCAGACTCACAGGAGCAGTGACCCCCAATGGATGGCTTGTGTCCCTGTCTCTCGGGTGTCTGGGGTCACATGGAAAAGCATAAAGAGAGAACTGTCCATAAAGAACAGGATTCTGGGCCAGGCATGGTGGTGCATGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGTGGGTGGATCATTTGAGGTAAGGAGTTCGAGACCAGCCTAGCCAATGTGGTGAAACCCCTTCTCTACTAAACATACAAAAAATTAGCTGGGCGTGGTGGCACGTGCCTGTAGTCCCAGCTACTCGGGAGACTAAGGCAGGAGAATCTCTTGAACCCAGGAGGCAGAAGTTGCAGTGAGCCGAGATCATGCCACTGCACTCCAGCCTGGACAACAGAGTGAGAGTCTGTCTCAAAAAAAAAACAAAAAAAAAAAACAAAAGAATAGGATTCTGGCCCAGCCATAGAGGTGGGAGTGGGCTGGGGTCCGGGGAAAGCAGGTTCCCCACAGGCTCAGGACACCGGGTTGATGTGTTCTAG

Seq C2 exon

GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTGCACGCCGGCAGCAAGCCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTTAATCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCATGGCGTCATGGACATCGGCCTGGACAGCCAAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000140548-ZNF710:NM_198526:3

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.025

Domain overlap (PFAM):

C1:

PF134651=zf-H2C2_2=PD(56.0=21.9),PF054957=zf-CHY=PD(73.2=64.1),PF134651=zf-H2C2_2=WD(100=40.6),PF136961=zf-CCHC_2=WD(100=18.8),PF054957=zf-CHY=PU(51.4=57.8),PF134651=zf-H2C2_2=PU(65.4=26.6),PF069576=COPI_C=PU(41.8=71.9)

A:

NA

C2:

PF054957=zf-CHY=PD(45.8=25.4),PF134651=zf-H2C2_2=PD(26.9=5.4),PF069576=COPI_C=PD(56.4=47.7),PF0009621=zf-C2H2=WD(100=18.5)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000268154