BtaINT0166008 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019174 | ZNF710
Description
zinc finger protein 710 [Source:HGNC Symbol;Acc:HGNC:25352]
Coordinates
chr21:21893163-21894151:+
Coord C1 exon
chr21:21893163-21893354
Coord A exon
chr21:21893355-21893976
Coord C2 exon
chr21:21893977-21894151
Length
622 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCG
5' ss Score
9.67
3' ss Seq
TGGGGCGGGGTGTGTTCCAGGTG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GGCGTGAAGGAGTTCAAGTGCGAGGTGTGTGGCCGAGAGTTCACCCTGCAGGCTAACATGAAGCGGCACATGCTGATCCACACCAGCGTCCGGCCCTACCAGTGTCACATCTGTTTCAAGACCTTCGTGCAGAAGCAGACCCTCAAGACCCACATGATCGTCCACTCGCCCGTGAAGCCGTTCAAATGCAAG
Seq A exon
GTACCGGACCCTCGGGCCCCAGGGCAGGACTTGCTCACAAGTGGCCCCGGCGTGTGATCACAGGAGGCGGGACCCAGGCTGGGCAAGGGGGGGGCCGCTCCCCCCACCCAACCCCCGTTGGCTGAAACTGCTGGGCTCTGGGGGGGTGGGGGGTAGGTGGTGAGGGTTGAGGTCCTACAAGCTACTGAATTGGCTGCTTTTCTTTGGCTGCACTGAGGCTTGTGGGATCTTAGTTCCCCAGCCAGAGATGGAACGCAGGCCCTTGGCAGTGAAAGTGCAGAATCTTAACCACTGGACCGCCAGGGAATTCCCCGAAGTTGATTTTGGAGAGTTGGGGGCGGGGGTGAAGGTCACGGTGCAGCCTCAGGGAAGGAGCCCAGGCCAGAGACTCAGTGCTGCTGGAGCTCCCAGCCTGGGTCTCAGCCTCGGCTCGGGGAGTGTGGGGCAGACCCGCAGGAACGGTGACCTGCAAGGAGGGGCCCAGTCCTCGGCCTCTGCAGTCACATAGGAAGGGACAAAGGGGATGCGATTCAGGCCCAGCCATGGAGGTGGGAGCGGCTAGGGGCGGGGGAGGACAGGCCCCCAGGCTGACAAGGCCGGGCTGGGGCGGGGTGTGTTCCAG
Seq C2 exon
GTGTGCGGGAAGTCCTTCAACCGCATGTACAACCTGCTGGGCCACATGCACCTTCACGCGGGTAGCAAACCCTTCAAGTGCCCCTACTGCTCCAGCAAGTTCAACCTCAAGGGCAACCTGAGCCGGCACATGAAGGTCAAGCACGGCGTCATGGACATCGGCCTGGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019174:ENSBTAT00000025518:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF054957=zf-CHY=PD(73.7=65.6),PF134651=zf-H2C2_2=PD(56.0=21.9),PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCAAGTGCGAGGTGTGTG
R:
TCCAGGCCGATGTCCATGAC
Band lengths:
349-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]