DreINT0181629 @ danRer10
Intron Retention
Gene
ENSDARG00000014680 | znf710a
Description
zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
Coordinates
chr18:26107473-26107965:+
Coord C1 exon
chr18:26107473-26107664
Coord A exon
chr18:26107665-26107790
Coord C2 exon
chr18:26107791-26107965
Length
126 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TTCCAAACTTGTTCCCGTAGGTG
3' ss Score
9.67
Exon sequences
Seq C1 exon
GGTATGAAGGAATACAAATGTGACGTCTGTTCTCGTGAGTTCACCCTCTCTGCCAACCTGAAGCGACACATGCTGATTCACACCAGTGTGCGCCCTTTCCAGTGCCATGTCTGCTTCAAGACCTTTGTTCAGAAACAGACACTTAAAACGCACATGATTGTCCACTTGCCTGTGAAACCTTTTAAGTGCAAG
Seq A exon
GTAGGTACTAAGAGCGCTTCCATGCAGAGCCTCCCTGCTGGAGTCCTCCAGACAGTCTATTTTGCTACTTGATATGGCCATGCATCAAAAATGGAGCTCTAATAGTTTCCAAACTTGTTCCCGTAG
Seq C2 exon
GTGTGTGGGAAGTCCTTCAACAGAATGTATAACCTGCTGGGTCACATGCACCTTCATGCCGGTAGCAAACCCTTCAAGTGCCCTTACTGCACCAGCAAGTTCAATTTGAAGGGTAACTTGAGTCGACACATGAAGGTGAAACATGGAATCCTGGACACCTCAAATGAAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014680:ENSDART00000015712:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.220
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(26.9=11.9),PF0009621=zf-C2H2=WD(100=40.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTCACCCTCTCTGCCAA
R:
GCAGTAAGGGCACTTGAAGGG
Band lengths:
247-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]