HsaEX0053625 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152299773-152301959:+
Coord C1 exon
chr2:152299773-152299843
Coord A exon
chr2:152300043-152300223
Coord C2 exon
chr2:152301852-152301959
Length
181 bp
Sequences
Splice sites
3' ss Seq
TTTTATAATTTTTTGTTCAGGTT
3' ss Score
8.99
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAACTCCAGCTTTGTTCTTAATTCAATTAATTTTCAACAATTTCTTGGAATGTGGTGTATCAGATGAAAG
Seq A exon
GTTCTTTCTCAGTTTGGAATCACTTGTAGGCTGTGTTCTTTCTGGTCCAACTTCACCACTAGCTTTCAGTGACTCAGTTTTAAATGTTATTAATCAAAATGCAAAGCAGTTGGAAAATAAGGAGCATCTCTGGAAAATGTGGAGTGTTATAGTCACCCCATTAACTGAATTGATTAATCAG
Seq C2 exon
ACCAATGAAGTAAATCAAGGTGATGCCTTAGAACATAATTTTAGTGCCATCTATGGTGCATTGACTTTACCAGTAAACCACATTTTTTCAGAACAGAGATTTCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCCAGCTTTGTTCTTAAT
R:
CACTGGAAATCTCTGTTCTGAAAA
Band lengths:
179-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)