BtaEX6009863 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44793705-44794633:-
Coord C1 exon
chr2:44794560-44794633
Coord A exon
chr2:44794189-44794369
Coord C2 exon
chr2:44793705-44793737
Length
181 bp
Sequences
Splice sites
3' ss Seq
CAAAAATTTTTTTCCATCAGGTT
3' ss Score
7.97
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAACCCCTGCTTTGTTCTTAATTCAGTTAACTTTCAATAATAATCTATTGGAATGTGGTGTGGAAGACGAAAG
Seq A exon
GTTTTTTCTCAACCTGGAAACACTTGTGGGCTGTGTTCTTTCGGGTCCAACTTCACCACTCGCTTTCAGTGACTCTGTCTTAAATGTTGTCAATCAAAATGCAAAGCAGTTGGATAACAAGGAGCATCTTTGGAGAATGTGGAGTATTATAGTCACCCCATTAACAGAATTGATTAATCAG
Seq C2 exon
TTAAATACTTTAAAAAGTGATAATATTGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'22-21,'22-20,23-21=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]