GgaEX1049343 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34657223-34658309:+
Coord C1 exon
chr7:34657223-34657296
Coord A exon
chr7:34657422-34657602
Coord C2 exon
chr7:34658202-34658309
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCCCAACTTTCCTTCCCTAGATT
3' ss Score
10.64
5' ss Seq
CGGGTACAG
5' ss Score
4.22
Exon sequences
Seq C1 exon
GGAACACCAGCTTTGTTCTTAGTTCAGCTGCCTTTCCATAACAACCTCTTGGAGTGGTGTGTGACAGATGAGAG
Seq A exon
ATTCTTCATCATTCTGGAAACTCTTATGCGCTATGTTTTATCCGGGCCTACATCTCTGTTGGCTTTCAGTGAGTCTGTGCTGTGTGTTATTAATCAGAACGCCAAGCAGGTGGAAAACAAGGAGCATCTTTGGAGGATGTGGAGTATTGTTGTTAACCCGCTGACTGACTGGATTAACCGG
Seq C2 exon
ACTAATGAAGTAAATCAAGGGGACGCACTGGAGCACAATTTCAATGCTGTTTATAATGCTCTGTTGCTACCAGTGTCCCATATCTTCCCTGTTCAGGAATTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-15/22=14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCAGCTTTGTTCTTAGTTCA
R:
CCTGAACAGGGAAGATATGGGAC
Band lengths:
170-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]