RnoEX0075837 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37620898-37624634:+
Coord C1 exon
chr3:37620898-37620971
Coord A exon
chr3:37622434-37622614
Coord C2 exon
chr3:37624527-37624634
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACATTGTTCATATTTTTTAGGTT
3' ss Score
11.08
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GGAACTCCAGCATTGTTCTTAATCCAGTTAATTTTAAACAACAATCTTTTAGAATGTGGTGTAGAAGATGAAAA
Seq A exon
GTTTTTTCTCAATCTAGAAACACTTGTAGGCTGTGTGCTTTCTGGTCCGACATCACCACTGGCTTTCAGTGATTCTGTATTAACTGTGATTAATCAGAATGCAAAGCAGTTGGCAAACAAGGAGCATCTCTGGAGAATGTGGAGTATGATAGTCAGTCCACTGACGGATGTGATTCATCAG
Seq C2 exon
ACCAATGAAGTGAATCAAGGTGATGCCTTAGAACATAATTTTAGTGCCATCTATGGTGCATTGACTTTGCCAATAAACCATATTTTTTCAACTCCAACATTTCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'22-20,'22-19,24-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCAGCATTGTTCTTAATCCAGT
R:
CGTGGGAAATGTTGGAGTTGA
Band lengths:
179-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]