MmuEX0039817 @ mm9
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
Rap1 interacting factor 1 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:51950109-51953544:+
Coord C1 exon
chr2:51950109-51950182
Coord A exon
chr2:51951342-51951522
Coord C2 exon
chr2:51953437-51953544
Length
181 bp
Sequences
Splice sites
3' ss Seq
ACACTGTTCATATATTTTAGGTT
3' ss Score
11.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGAACTCCAGCATTGTTTTTAATCCAGTTAATTTTCAACAACAATCTTTTAGAATGTGGTGTAGAAGATGAGAA
Seq A exon
GTTTTTTCTCAATCTAGAAACACTTGTAGGCTGTGTACTTTCTGGTCCAACATCACCACTGGCTTTTAGTGATTCTGTTCTAACTGTGATTAATCAGAATGCAAAGCAGTTGGTAAACAAGGAGCATCTCTGGAGAATGTGGAGTATGATAGTCAGTCCACTGACTGATGTGATTCACCAG
Seq C2 exon
ACCAATGAAGTGAATCAAGGCGATGCCTTAGAACATAATTTTAGTGCCATCTATGGTGCATTGACTTTACCAATAAACCATATTTTTTCAGCTCAGACATTTCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTCCAGCATTGTTTTTAATCCA
R:
CGTGGGAAATGTCTGAGCTGA
Band lengths:
182-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: