HsaEX0053873 @ hg19
Exon Skipping
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49750946-49751430:+
Coord C1 exon
chr3:49750946-49751020
Coord A exon
chr3:49751171-49751258
Coord C2 exon
chr3:49751343-49751430
Length
88 bp
Sequences
Splice sites
3' ss Seq
GGCACGGTGTGTCCCCGCAGACA
3' ss Score
8.94
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCTATGAAGAGACCCTGACCCGCCTGGCTGCCATTCTCGCCAAACACTTTGCCGACGCACGCATTGTGGGCACTG
Seq A exon
ACATCCGAGACTCACTGATGCAGGCCCTGGCCAGCTACGTGTGCTACCCACACTCCCTGCGGGCTGTGGAGCGAATCCCCGAGGAGCA
Seq C2 exon
GCGTATCGCCATGGTGAGGAACCTCCTGGCGCCCTATGAGCAGCGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAGAGACCCTGACCCGC
R:
CTCCAGAGCCGCACCAGG
Band lengths:
160-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)