RnoEX6037581 @ rn6
Exon Skipping
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116835726-116836295:-
Coord C1 exon
chr8:116836221-116836295
Coord A exon
chr8:116835902-116835989
Coord C2 exon
chr8:116835726-116835813
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCATTAGCATATCCTGACAGACA
3' ss Score
2.98
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
Exon sequences
Seq C1 exon
GCTATGAAGAGACCCTGACCCGCTTAGCTGCCATCCTCGCCAAACACTTTGCTGACCCTCGAATAGTAGGCACTG
Seq A exon
ACATTCGAGACTCGCTGATGCAGGCCCTGGCCAGTTACGTGTGTTACCCACATTCCCTGCGGGCCGTGGAACGGATCCCCGAGGAGCA
Seq C2 exon
GCGCATCGCCATGGTGAGGAACCTTTTGGCCCCCTATGAGCAACGACCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTTTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-'55-55,'55-54,56-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGAAGAGACCCTGACCCGC
R:
TCCAAAGCCGCACCAGGATC
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]