BtaEX6095355 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011588 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr22:51061740-51062226:-
Coord C1 exon
chr22:51062152-51062226
Coord A exon
chr22:51061916-51062003
Coord C2 exon
chr22:51061740-51061827
Length
88 bp
Sequences
Splice sites
3' ss Seq
GGTGTGGCCTGTCCCGGCAGACA
3' ss Score
7.22
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GCTACGAGGAGACCCTGACCCGTCTGGCCGCCATCCTTGCCAAACACTTTGCAGACACACGCATCGTGGGCACTG
Seq A exon
ACATCCGGGACTCACTGATGCAGGCCCTGGCCAGCTACGTGTGCTACCCCAACTCCCTGCGAGCCGTGGAGCGGATCCCTGAGGAGCA
Seq C2 exon
GCGCATTGCCATGGTGAGGAACCTCCTGGCTCCCTATGAGCAACGGCCCTGGGCCCAGACCAACTGGATCCTGGTTCGGCTCTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011588-'33-45,'33-43,34-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGGAGACCCTGACCC
R:
GCCAGAGCCGAACCAGGATC
Band lengths:
160-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]