GgaEX1049586 @ galGal3
Exon Skipping
Gene
ENSGALG00000002486 | RNF123
Description
NA
Coordinates
chr12:2200158-2203239:+
Coord C1 exon
chr12:2200158-2200232
Coord A exon
chr12:2202813-2202900
Coord C2 exon
chr12:2203152-2203239
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTTTGCTCCACAGACA
3' ss Score
11.2
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCTACGAAGAAACCCTGATGCGCCTGGCTGCCATCCTGGCCAAACACTTTGCTGACTCAAGGATTGTGGGCACAG
Seq A exon
ACATCCGGGACTCCCTGATGCAGGCGCTGGCCAGCTATGTCTGCTACCCCCACTCACTGCGTGCTGTAGAGAGGATCCCAGAAGACCA
Seq C2 exon
GCGGATCTCCATGATGAAGAACCTCTTGGCTCCCTACGAACAGCGGCCCTGGGCACAGACCAACTGGATCCTCGTCAGGCTGTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAAGAAACCCTGATGCGC
R:
GCCACAGCCTGACGAGGATC
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]