GgaEX1049586 @ galGal4
Exon Skipping
Gene
ENSGALG00000002486 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:HGNC:21148]
Coordinates
chr12:2363635-2366716:+
Coord C1 exon
chr12:2363635-2363709
Coord A exon
chr12:2366290-2366377
Coord C2 exon
chr12:2366629-2366716
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCTTCTCTTTGCTCCACAGACA
3' ss Score
11.2
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCTACGAAGAAACCCTGATGCGCCTGGCTGCCATCCTGGCCAAACACTTTGCTGACTCAAGGATTGTGGGCACAG
Seq A exon
ACATCCGGGACTCCCTGATGCAGGCGCTGGCCAGCTATGTCTGCTACCCCCACTCACTGCGTGCTGTAGAGAGGATCCCAGAAGACCA
Seq C2 exon
GCGGATCTCCATGATGAAGAACCTCTTGGCTCCCTACGAACAGCGGCCCTGGGCACAGACCAACTGGATCCTCGTCAGGCTGTGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002486-'32-41,'32-40,34-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGAAGAAACCCTGATGCGC
R:
GCCACAGCCTGACGAGGATC
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]