MmuEX6068809 @ mm10
Exon Skipping
Gene
ENSMUSG00000041528 | Rnf123
Description
ring finger protein 123 [Source:MGI Symbol;Acc:MGI:2148796]
Coordinates
chr9:108058336-108058857:-
Coord C1 exon
chr9:108058783-108058857
Coord A exon
chr9:108058509-108058596
Coord C2 exon
chr9:108058336-108058423
Length
88 bp
Sequences
Splice sites
3' ss Seq
GGCATAGCATATCCTGACAGATA
3' ss Score
2.93
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GCTATGAAGAGACCCTGACACGCTTAGCTGCCATCCTCGCCAAACACTTTGCTGACCCTCGAATAGTAGGCACTG
Seq A exon
ATATTCGAGACTCACTGATGCAGGCCCTGGCCAGCTATGTGTGCTACCCACACTCCCTGCGGGCTGTGGAACGGATTCCTGAGGAACA
Seq C2 exon
GCGCATCGCCATGGTGAGGAACCTTTTGGCACCCTATGAGCAACGGCCCTGGGCCCAGACCAACTGGATCCTGGTGCGGCTTTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041528-'66-74,'66-73,67-74=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGAGACCCTGACACGCT
R:
CTCCAAAGCCGCACCAGGAT
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types