DreEX6099751 @ danRer10
Exon Skipping
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34546630-34552385:-
Coord C1 exon
chr22:34552311-34552385
Coord A exon
chr22:34548047-34548134
Coord C2 exon
chr22:34546630-34546717
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTTTATTTTCCATTACAGATA
3' ss Score
11.22
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTATGAGGACACACTCATTCAGCTCGCAGCTATTCTCGCCAAACACTTCGCTGATCCTCGCATCGTCGGCACTG
Seq A exon
ATATCAAAGATTCACTGATGCAGGCTTTGGCCAGTTACGTGTGTTACCCACAGTCCCTGCGGGCCGTCGAGAGGATCCCAGAAGAACA
Seq C2 exon
GCGGATGGCTATGATGAAAAACTTACTGGCTCCATATGAGCAGAGACCCTGGGCTCAAACCAACTGGATCCTGGTTCGTCTTTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGACACACTCATTCAGCTC
R:
CCTCCAAAGACGAACCAGGAT
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]