HsaEX0063553 @ hg19
Exon Skipping
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160006881-160025883:+
Coord C1 exon
chr2:160006881-160007067
Coord A exon
chr2:160019794-160020057
Coord C2 exon
chr2:160025761-160025883
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTCTTTCATTTCAGCCA
3' ss Score
7.67
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCACAGCTCTGAGTCAAGGCATCAGTCCTTGCTCCACACTAACAAGCAGCACCGCATCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATTACAAGTTCATCCGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAAGATGGAAACCTAAGATTAGGGGTTCAGAAGGGAGTGCTTCATGACCGCAGGGCAGATAACTGCTCCCCAGTGGCAGAAGAGGAGACCACCGGGTCAGCAGAGAGCACGCTGCCCAAAGCAGAATCCTCAGCTGGAGATGGTCCAGTCCCTTATTCTCAGGGCTCCAGCTCACTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq C2 exon
CAACAAGCTCAACCAAATTGGAAGATCTGAGTTATTTAGACGGGCAGAGAAATGCTCCTCTACGGACGTCAATTAGATTACCATGGCACAATACGGCCGGAGGTAGGGCACAGGAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183_MULTIEX1-8/10=7-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.969 C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGGCATCAGTCCTTGCT
R:
AACTTCCTGTGCCCTACCTCC
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)