RnoEX0088535 @ rn6
Exon Skipping
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45844937-45863335:+
Coord C1 exon
chr3:45844937-45845123
Coord A exon
chr3:45857842-45858105
Coord C2 exon
chr3:45863234-45863335
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATTTTGATCTCTCATTTCAGCCA
3' ss Score
7.96
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCACAGCCCTGAGTCAAGGCATCAGTCCTTGCTCCACACTGACAAGCAGCACCGCCTCTCCCAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGCCCCTGTGAGACCATTAGCAGCCCTAGTTCCACCCTGGAGAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATTACCAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAATAGAGATGGAAGCCTGAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCTGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCGGCGGAGAGCGTACTGCCCAAGGCGGAATCCTCAGCTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCAGGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq C2 exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGCTATTTAGACGGACAGAGAAATGCTCCTCTCCGGACGTCGATTAGATTGCCCTGGCACAGTACGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.587 A=0.910 C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGAGTCAAGGCATCAG
R:
CTCCAGCCGTACTGTGCCAG
Band lengths:
284-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]