GgaEX6043383 @ galGal3
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
NA
Coordinates
chr7:38138710-38141201:+
Coord C1 exon
chr7:38138710-38138899
Coord A exon
chr7:38139570-38139827
Coord C2 exon
chr7:38141097-38141201
Length
258 bp
Sequences
Splice sites
3' ss Seq
GATCTTATTTTTGTTCTCAGCAA
3' ss Score
6.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
Seq A exon
CAACTGTAACAAGTTCATCAGAAAATGATGATCGTAGTGGATCCAGTTTGGAATGGAGCAAGGATGGGAGTCTCAGAGCTGGAGCACATCGAGGAATTGGTCACGATCGAAGAACTGACAATTGTTCACCAGTTGCAGAAGAGGAGGCTGTTGGATCTGCTGAGAATTTGCCAAAGGAAGTACCAACAGGAGAGGGTCCTGTTCCTTATACTCAGAGTTCTGGATCTTTAATAATGCCTCGTCCAAACTCTGTTGCAG
Seq C2 exon
CAACAAGTTCTACCAAATTGGAAGATCTGAGTTATTTGGATGGACAAAGAAATGCTCCTTTACGCACTTCAATTCGCTTACCTTGGCACAACACTGCTGGTGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=1.000 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATAGCCAGTCAAGGAGTCAGT
R:
TTCCACCAGCAGTGTTGTGC
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]