DreEX6020968 @ danRer10
Exon Skipping
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11858200-11869731:-
Coord C1 exon
chr6:11869521-11869731
Coord A exon
chr6:11865229-11865489
Coord C2 exon
chr6:11858200-11858325
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTCTCCGTCCTGCAGCAA
3' ss Score
10.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTATAGTGTCCAGTCAGGGCGTGAGTCCCTGCTCCACTCTGACCAGCAGTACGGCGTCTCCCAGCGCCGAGAGCCCCTGCTCCACCTTACCTGAGAGCTCCTCCAACAGCAGAGCTCCGGTCATCTGCTCCAGCGCCTGCTCCACTGCCACCTCCACCGTCATCACCACACCCAGCTCAACCCTGGAGAGCAAAGACAGTGGAATCATAG
Seq A exon
CAACAGTCACCAGTTCTAGTGAGAATGAAGAGCGCTGTGGATCTAGTCTGGAGTGGGCGAAAGATGGAGGTGCGGGTGTAAGAGGCGAGAGCGGGCGTAGCTGTATTCCCATCACTCCAGAGGAGCCCACGGTCTCTAGTGAAGTTCAACCGAGGACAAGCAGCACAGGCGGGGCGGCACCTGTTGTGACATCACCACTGGATGGACCAATCACGTATCACAGTGCCTCTTTGGTTATGCCACGCCCAAATTCTGTGGCAG
Seq C2 exon
CCACCAGCAGCACAAAGCTGGAGGAGCTGCGCTATCTGGACGAGCAGAGGAACGCTCCGCAGCGCTCCTCCATGCGTTTGCCCTGGCATGGAGCTCACACGGGCGGCCGCAGCCAAGAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.898 C2=0.930
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTCTGACCAGCAGTACG
R:
CTTTGGTCTCTTGGCTGCGG
Band lengths:
304-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]