GgaEX6043383 @ galGal4
Exon Skipping
Gene
ENSGALG00000012570 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr7:36002374-36004886:+
Coord C1 exon
chr7:36002374-36002563
Coord A exon
chr7:36003234-36003491
Coord C2 exon
chr7:36004761-36004886
Length
258 bp
Sequences
Splice sites
3' ss Seq
GATCTTATTTTTGTTCTCAGCAA
3' ss Score
6.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTACTATAGCCAGTCAAGGAGTCAGTCCATGTTCTACCCTCACAAGCAGCACTACATCTCCAAGCACTGATAGCCCATGCTCAACTCTTAATAGCTGTACTGGCAAAGCAGCAGCCAACAAAGGTAGTCCCTGTGAAACCATGAGAAGCCCTAGCTCCACCCTGGAGAGCAAGGACAGTGGAATAATAG
Seq A exon
CAACTGTAACAAGTTCATCAGAAAATGATGATCGTAGTGGATCCAGTTTGGAATGGAGCAAGGATGGGAGTCTCAGAGCTGGAGCACATCGAGGAATTGGTCACGATCGAAGAACTGACAATTGTTCACCAGTTGCAGAAGAGGAGGCTGTTGGATCTGCTGAGAATTTGCCAAAGGAAGTACCAACAGGAGAGGGTCCTGTTCCTTATACTCAGAGTTCTGGATCTTTAATAATGCCTCGTCCAAACTCTGTTGCAG
Seq C2 exon
CAACAAGTTCTACCAAATTGGAAGATCTGAGTTATTTGGATGGACAAAGAAATGCTCCTTTACGCACTTCAATTCGCTTACCTTGGCACAACACTGCTGGTGGAAGAGTGCAGCAGGAAAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012570-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.797 A=1.000 C2=0.512
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAGTCCATGTTCTACCCT
R:
TTTCCTGCTGCACTCTTCCAC
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]