MmuEX0046252 @ mm9
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59610410-59628955:+
Coord C1 exon
chr2:59610410-59610596
Coord A exon
chr2:59623381-59623644
Coord C2 exon
chr2:59628833-59628955
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATTTCGATCTCTCATTTCAGCCA
3' ss Score
7.8
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCACAGCCCTGAGTCAAGGCATCAGCCCTTGTTCCACACTCACAAGCAGCACTGCCTCTCCCAGCACCGACAGCCCCTGCTCGACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAGCAAAAGTCCCTGCGAGACCATTAGCAGCCCCAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATCACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAACAGAGACGGAAGCCTAAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCAGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCCGCGGAGAGCGTGCTGCCCAAGGCGGAACCCTCAGCCGGAGATGGTCCGGTGCCCTATCCTCAGAGCTCTGGCTCGCTCATAATGCCACGGCCCAACTCAGTTGCAG
Seq C2 exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGTTATTTGGACGGACAGAGAAATGCTCCTCTTCGGACATCAATTAGATTGCCCTGGCACAATACGGCTGGAGGTAGGGCACCGGAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168_MULTIEX1-7/25=6-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.940 C2=0.477
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCCTGAGTCAAGGCATC
R:
CCCTACCTCCAGCCGTATTGT
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: