MmuEX0046252 @ mm10
Exon Skipping
Gene
ENSMUSG00000035168 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:MGI Symbol;Acc:MGI:1914110]
Coordinates
chr2:59772353-59790877:+
Coord C1 exon
chr2:59772353-59772539
Coord A exon
chr2:59785324-59785587
Coord C2 exon
chr2:59790776-59790877
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATTTCGATCTCTCATTTCAGCCA
3' ss Score
7.8
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TGCACAGCCCTGAGTCAAGGCATCAGCCCTTGTTCCACACTCACAAGCAGCACTGCCTCTCCCAGCACCGACAGCCCCTGCTCGACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAGCAAAAGTCCCTGCGAGACCATTAGCAGCCCCAGTTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATCACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTCTGGAATGGAACAGAGACGGAAGCCTAAGGTTAGGGGTTCAGAAGGGAGTGCTTCATGACCGAAGGGCAGATAACTGTTCCCCAGTGGCAGAAGAGGAGACTACTGGGTCCGCGGAGAGCGTGCTGCCCAAGGCGGAACCCTCAGCCGGAGATGGTCCGGTGCCCTATCCTCAGAGCTCTGGCTCGCTCATAATGCCACGGCCCAACTCAGTTGCAG
Seq C2 exon
CGACAAGTTCTACCAAATTGGAAGACTTGAGTTATTTGGACGGACAGAGAAATGCTCCTCTTCGGACATCAATTAGATTGCCCTGGCACAATACGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035168-'54-38,'54-36,63-38
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=0.944 C2=0.351
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGAGTCAAGGCATCAG
R:
CTCCAGCCGTATTGTGCCAG
Band lengths:
284-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types