BtaEX0035572 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004177 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:HGNC:29364]
Coordinates
chr2:37295234-37315344:-
Coord C1 exon
chr2:37315158-37315344
Coord A exon
chr2:37300955-37301218
Coord C2 exon
chr2:37295234-37295356
Length
264 bp
Sequences
Splice sites
3' ss Seq
ATTTTGGTCTCTCATTTCAGCCA
3' ss Score
7.75
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCACAGCTCTGAGCCAAGGCATCAGCCCTTGCTCCACTCTTACGAGCAGCACCGCCTCTCCTAGCACCGATAGCCCCTGCTCAACCTTGAATAGCTGTGTCAGCAAGACGGCAGCCAACAAAAGTCCCTGTGAGACCATTAGCAGCCCTAGCTCCACCCTGGAAAGCAAGGACAGTGGAATTATAG
Seq A exon
CCACAATTACAAGTTCATCGGAAAATGATGACCGGAGTGGCTCCAGTTTGGAATGGAATAAGGACGGAAGCCTAAGGTTAGGGGTACAGAAGGGAGTGCTCCATGACCGCAGGGCAGATAATTGCTCCCCAGTGGCAGAAGAGGAGCCCCCTGGGCCAGCGGAGAGCGTGCTGCCCAAAGCCGAAGCCTCAGTTGGAGATGGTCCGGTCCCTTATTCTCAGAGCTCCAGCTCGCTAATAATGCCACGGCCCAACTCAGTTGCAG
Seq C2 exon
CAACGAGCTCAACCAAATTGGAAGACCTGAGTTATTTGGACGGACAGAGAAATGCTCCCCTTCGGACATCAATTAGGTTACCGTGGCACAATACAGCTGGAGGTAGGGCACAGGAAGTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004177-'17-24,'17-20,22-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=0.944 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGAGCCAAGGCATCAG
R:
GTGCCCTACCTCCAGCTGTAT
Band lengths:
292-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development