HsaEX0066763 @ hg19
Exon Skipping
Gene
ENSG00000166157 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:12023]
Coordinates
chr21:10914363-10920164:-
Coord C1 exon
chr21:10920084-10920164
Coord A exon
chr21:10916370-10916475
Coord C2 exon
chr21:10914363-10914442
Length
106 bp
Sequences
Splice sites
3' ss Seq
AGATTTCTGTTGCTTTTCAGAAG
3' ss Score
7.57
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GAAAGCCTGTATTATTTTGGAGAAAGGCGAACAGATAAAACCCACAGCGAAAAATTTCAGGGAGTAAAAACTCCTTCTCAG
Seq A exon
AAGAGATATGTTGCATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCTCCAAGACGGATACTCTTTATAAAACACTTCATTATTTATTCGATTCCTC
Seq C2 exon
GTTATGTACGTGATCTAAAAATCCAAATAGAAATGGAGAAAAAGGTTGTCTTTTCCACTATTTCATTAGGAAAATGTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166157_MULTIEX1-7/10=6-8
Average complexity
S
Mappability confidence:
100%=86=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0078215=DSPc=PD(16.5=77.8)
A:
PF104094=PTEN_C2=PU(13.0=47.2)
C2:
PF104094=PTEN_C2=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTATTATTTTGGAGAAAGGCG
R:
CGAACATTTTCCTAATGAAATAGTGG
Band lengths:
157-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)