HsaEX1015806 @ hg38
Exon Skipping
Gene
ENSG00000159289 | GOLGA6A
Description
golgin A6 family member A [Source:HGNC Symbol;Acc:HGNC:13567]
Coordinates
chr15:77922930-77927159:-
Coord C1 exon
chr15:77926742-77927159
Coord A exon
chr15:77924936-77925055
Coord C2 exon
chr15:77922930-77923010
Length
120 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCTTCTTTCCCACAGCTA
3' ss Score
11.42
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CACATATATATAAAGTATAAACACATATATTTTTTAAAGTTTAACATTTTAAAGCAAAAGCCGGTCCTCCCCTCTCCCGGAGTAGGCAGGCCCCGCCCCTCTCCCCGAATGGGCGGGGACAGCAGTCGCATGGGCAGCTTTCCTTGTGATGTCACAGGTTCCTCTGGACACACTGCTGCCTGGCCACGCCTCCTTTCCTTTTCATCTTTCTCATTGACCAATGGGATCGGAGCATTAAGGCCACACCCCTATTCTGCATTCTAGTGTGGCCCTGGTTACGCCTCCTCTGGCTCAGTCACACAGCAGCCTTGTAGGTGACTGGAGGTGTTCGCTGATGTGGCCCCAACCCTACCTCCCTCCCGACCCCATGATGCCAGAAGAAACTCGATGGAACAAATTGGCAGCAGTCAAGAAAAAG
Seq A exon
CTAAAAGAATATCAGCAAAGGAAGAGCCCTGGTGTTCCAGCAGGAGCAAAGACAAAAAAGAAAAAAACTGGCAGTAGCCCTGAGACAACCACTTCTGGTGGTTGCCACTCACCTGGGGAT
Seq C2 exon
AGCCAGTACCAAGAACTAGCAGTAGCCCTGGAGTCAAGCTCCGTGACAATCAATCAACTCAATGAAAACATAGAATCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159289_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAATGGGATCGGAGCATT
R:
GAGCTTGACTCCAGGGCTACT
Band lengths:
244-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains