HsaEX6029688 @ hg38
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr1:31689050-31689851:-
Coord C1 exon
chr1:31689741-31689851
Coord A exon
chr1:31689332-31689359
Coord C2 exon
chr1:31689050-31689085
Length
28 bp
Sequences
Splice sites
3' ss Seq
TCACAGACCCCCTCTTTCAGGAG
3' ss Score
6.95
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGTGACCCCTGTGAAGTGTGCCCAACACTGCCTGAAGGGTTCCAGAACTTTGTTGGACTTCCTGGAAAGCCAGGGCCCAAAGGGGAGCCTGGTGATCCTGTACCAGCCAGG
Seq A exon
GAGCACCTGGGAGCTGTCAGACAAAAAG
Seq C2 exon
GGAGACCCTGGCATCCAAGGCATCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.1=32.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGAAGGGTTCCAGAAC
R:
TCCTTTGATGCCTTGGATGCC
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains