HsaEX6029688 @ hg19
Exon Skipping
Gene
ENSG00000084636 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:2193]
Coordinates
chr1:32154651-32155452:-
Coord C1 exon
chr1:32155342-32155452
Coord A exon
chr1:32154933-32154960
Coord C2 exon
chr1:32154651-32154686
Length
28 bp
Sequences
Splice sites
3' ss Seq
TCACAGACCCCCTCTTTCAGGAG
3' ss Score
6.95
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGTGACCCCTGTGAAGTGTGCCCAACACTGCCTGAAGGGTTCCAGAACTTTGTTGGACTTCCTGGAAAGCCAGGGCCCAAAGGGGAGCCTGGTGATCCTGTACCAGCCAGG
Seq A exon
GAGCACCTGGGAGCTGTCAGACAAAAAG
Seq C2 exon
GGAGACCCTGGCATCCAAGGCATCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000084636-'25-29,'25-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.1=32.4),PF0139113=Collagen=PU(60.4=78.4)
A:
NA
C2:
PF0139113=Collagen=FE(22.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGAAGGGTTCCAGAAC
R:
TCCTTTGATGCCTTGGATGCC
Band lengths:
114-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)