RnoEX0022903 @ rn6
Exon Skipping
Gene
ENSRNOG00000031475 | Col16a1
Description
collagen type XVI alpha 1 chain [Source:RGD Symbol;Acc:1310982]
Coordinates
chr5:148271084-148271846:+
Coord C1 exon
chr5:148271084-148271174
Coord A exon
chr5:148271544-148271579
Coord C2 exon
chr5:148271811-148271846
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCATATACCCTGTCTTTCAGGAG
3' ss Score
8.86
5' ss Seq
CGGGTGTGT
5' ss Score
5.31
Exon sequences
Seq C1 exon
GGTGACCCCTGTGAAGTGTGTCCAACGCTGCCCGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGGCCTAAAGGAGAACCAG
Seq A exon
GAGGGCCTAGGAACTGTTGGACTGAAAGGTGACCGG
Seq C2 exon
GGAGATCCAGGCATCCAAGGAATGAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000031475_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=50=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.3=21.6),PF0139113=Collagen=PU(49.1=70.3)
A:
PF0139113=Collagen=FE(17.5=100)
C2:
PF0139113=Collagen=FE(20.8=100)
Main Inclusion Isoform:
ENSRNOT00000067663fB3377
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCCCTGTGAAGTGTGT
R:
TCCTTGGATGCCTGGATCTCC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]