BtaEX6012370 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010050 | COL16A1
Description
collagen, type XVI, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2193]
Coordinates
chr2:122570268-122571084:+
Coord C1 exon
chr2:122570268-122570378
Coord A exon
chr2:122570782-122570817
Coord C2 exon
chr2:122571049-122571084
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCACAGATGCTTTTTTTCAGGAG
3' ss Score
6.12
5' ss Seq
CGGGTATGT
5' ss Score
8.79
Exon sequences
Seq C1 exon
GGTGACCCCTGTGAAGTGTGCCCAACACTACCTGAAGGGTTCCAGAACTTTGTGGGGCTCCCTGGAAAGCCAGGACCCAAGGGAGAACCAGGTGATCCTGCACCAGCCAGG
Seq A exon
GAGAGTCTGGGAGCTGTTGGACAAAAAGGTGATCGG
Seq C2 exon
GGAGACCCTGGCATCCAAGGCCTCAAAGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010050-'28-34,'28-33,31-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.3=21.6),PF0139113=Collagen=PU(57.4=73.0)
A:
PF0139113=Collagen=FE(18.6=100)
C2:
PF0139113=Collagen=FE(23.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCAACACTACCTGAAGG
R:
CTCCTTTGAGGCCTTGGATGC
Band lengths:
125-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]