HsaEX6033420 @ hg19
Exon Skipping
Gene
ENSG00000143379 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:10761]
Coordinates
chr1:150935450-150936559:+
Coord C1 exon
chr1:150935450-150935615
Coord A exon
chr1:150936006-150936217
Coord C2 exon
chr1:150936471-150936559
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCATTCTCCCTCCTGTCCAGGTC
3' ss Score
10.07
5' ss Seq
AACGTGAGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GATGTCCTGACACTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGTGGGACCAGCCGAAAGCCCACTGCTGGTCAGACTTCGGCTACAGCGGTTGACAGTGATGATATCCAGACCATATCCTCTGGCTCTGAAGGGGATGACTTTGAGGACAAGAAGAACATGACTG
Seq A exon
GTCCAATGAAGCGTCAAGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGGATTGCAATTAAATCAACCAACATGGCCTCTGTGGACAAGGGGGAGAGCGCACCTGTTCGTAAGAACACACGCCAATTCTATGATGGCGAGGAGTCTTGCTACATCATTGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAC
Seq C2 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTCTTCGTGGATACCCATGATCTTCGCTTCCCCTGGGTGGCCTTCTTTGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000143379-'39-31,'39-30,40-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.310 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.1=100)
A:
PF0085623=SET=FE(15.5=100)
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCCTGACACTGTCCAGC
R:
GCAAAGAAGGCCACCCAGG
Band lengths:
249-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)