BtaEX6015154 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19844564-19845636:-
Coord C1 exon
chr3:19845471-19845636
Coord A exon
chr3:19844911-19845122
Coord C2 exon
chr3:19844564-19844652
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTCTCCTTCTCCAGGTC
3' ss Score
11.95
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
GATATCCTGACCCTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGTGGGACCAGCCGGAAGCCCACTGCTGGCCAGACTTCAGCCGCAGCCGTGGACAGTGATGATATCCAGACCATCTCCTCTGGCTCTGAAGGGGATGACTTTGAGGACAAGAAGAACATGTCTG
Seq A exon
GTCCAATGAAGCGCCAAGTGGCAGTAAAATCCACCCGGGGTTTTGCTTTGAAATCAACCCATGGCATTGCCATTAAATCAACCAACATGGCATCTGTGGAAAAGGGGGAGAGTGCACCCATTCGTAAGAACACACGCCAGTTCTATGATGGGGAGGAGTCTTGCTACATCATCGATGCCAAGCTTGAAGGCAACCTGGGCCGCTACCTCAAT
Seq C2 exon
CACAGTTGCAGCCCTAACCTGTTTGTCCAGAATGTCTTCGTGGATACTCATGATCTCCGCTTCCCGTGGGTGGCCTTCTTCGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'36-33,'36-32,39-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.310 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.1=100)
A:
PF0085623=SET=FE(15.5=100)
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCTGACCCTGTCCAGCAG
R:
GCGAAGAAGGCCACCCAC
Band lengths:
247-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]