RnoEX0079913 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196496623-196498089:-
Coord C1 exon
chr2:196497924-196498089
Coord A exon
chr2:196496919-196497130
Coord C2 exon
chr2:196496623-196496711
Length
212 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTTCTTTCTAGGAC
3' ss Score
14.01
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
GATATCCTAACACTGTCCAGCAGCACAGAAAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTACTGGTCAGACTTCAGCCACAGCAGTTGACAGTGATGACATCCAGACCATCTCTTCTGGCTCTGATGGCGATGACTTTGAGGACAAGAAGAACTTGTCGG
Seq A exon
GACCAACAAAGCGTCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCAAACTTGAAGGCAACCTAGGCCGCTACCTCAAT
Seq C2 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAACGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'43-27,'43-26,49-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.282 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.2=100)
A:
PF0085623=SET=FE(15.5=100)
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATATCCTAACACTGTCCAGCA
R:
AAAAAGGCCACCCAAGGGAAG
Band lengths:
246-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]