DreEX6040655 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22093563-22094964:-
Coord C1 exon
chr16:22094877-22094964
Coord A exon
chr16:22093799-22094037
Coord C2 exon
chr16:22093563-22093651
Length
239 bp
Sequences
Splice sites
3' ss Seq
TCTGTGTGTCTTTCTGTCAGCTG
3' ss Score
9.09
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GATGTGATGACTCTCTCCGACAGTGACGATGTGCAAACTATCAGCTCAGGATCAGATGACAATAAGGAGAGAGAGAAAAAGACTCAGG
Seq A exon
CTGTGGTGAAGAGGCAGGTGGCTGTGAAGTCCACACGTGGCATTGCTTTGAAGTCCCACAGTATGATGGTGAAATCAGGTGGAGGGGGTGCAGGAGGCGGTGGGTCAGGCCCGTCTCACGGCCATGGAGGAGGAGGTGGAGACAATGGCCCTAAAAACACCCGCCTGTTCTTTGATGGGGAGGAATCCTGCTACATCATTGATGCCAAACTAGAGGGCAACCTCGGACGCTACCTCAAC
Seq C2 exon
CATAGCTGCAGCCCCAATCTGTTTGTCCAGAATGTGTTTGTGGACACTCACGACCTGCGCTTTCCCTGGGTGGCCTTCTTTGCTAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-'33-35,'33-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.553 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(10.6=100)
A:
PF0085623=SET=PD(11.0=37.5),PF0085623=SET=PU(50.0=55.0)
C2:
PF0085623=SET=FE(33.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGACTCTCTCCGACAGT
R:
CTAGCAAAGAAGGCCACCCAG
Band lengths:
172-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]