MmuEX6072553 @ mm9
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95128227-95129805:-
Coord C1 exon
chr3:95129640-95129805
Coord A exon
chr3:95128552-95128763
Coord C2 exon
chr3:95128227-95128315
Length
212 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTTTCTCTCCAGGAC
3' ss Score
13.58
5' ss Seq
AATGTGAGA
5' ss Score
3.37
Exon sequences
Seq C1 exon
GACATCCTGACACTGTCCAGCAGCACAGAGAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTGCTGGTCACACTTCAGCCACAGCTGTTGATAGTGATGACATCCAGACCATCTCTTCTGGCTCTGACGGTGATGACTTTGAGGACAAGAAGAACTTGTCAG
Seq A exon
GACCAACAAAGCGCCAGGTGGCAGTAAAATCAACCCGAGGCTTTGCTCTTAAATCAACCCATGGTATTGCCATTAAATCAACCAACATGGCTTCCGTGGACAAGGGGGAGAGTGCACCAGTTCGTAAGAACACACGCCAGTTCTATGATGGTGAAGAGTCTTGCTACATCATTGATGCCAAACTTGAAGGCAACCTAGGCCGCTACCTCAAT
Seq C2 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTGTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTCTTTGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'27-25,'27-24,32-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.282 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.2=100)
A:
PF0085623=SET=FE(15.5=100)
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCCTGACACTGTCCAGC
R:
AAAGAAGGCCACCCAAGGGAA
Band lengths:
247-459
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: