MmuEX6072553 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95324305-95325883:-
Coord C1 exon
chr3:95325718-95325883
Coord A exon
chr3:95324825-95324841
Coord C2 exon
chr3:95324305-95324393
Length
17 bp
Sequences
Splice sites
3' ss Seq
CCCTTTTTTTTTCTCTCCAGGAC
3' ss Score
13.58
5' ss Seq
CAGGTGGCA
5' ss Score
1.45
Exon sequences
Seq C1 exon
GACATCCTGACACTGTCCAGCAGCACAGAGAGTGAGGGGGAAAGTGGAACCAGCCGAAAGCCCACTGCTGGTCACACTTCAGCCACAGCTGTTGATAGTGATGACATCCAGACCATCTCTTCTGGCTCTGACGGTGATGACTTTGAGGACAAGAAGAACTTGTCAG
Seq A exon
GACCAACAAAGCGCCAG
Seq C2 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAATGTGTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTCTTTGCCAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'42-40,'42-39,43-40
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.282 C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(12.2=100)
A:
PF0085623=SET=FE(15.5=100)
C2:
PF0085623=SET=FE(6.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTGGCTCTGACGGTGAT
R:
AGGGAAGCGAAGATCATGGGT
Band lengths:
115-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types