HsaEX6035703 @ hg19
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium channel, subfamily T, member 2 [Source:HGNC Symbol;Acc:18866]
Coordinates
chr1:196434423-196438198:-
Coord C1 exon
chr1:196438124-196438198
Coord A exon
chr1:196436833-196436916
Coord C2 exon
chr1:196434423-196434517
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTCCAGATA
3' ss Score
11.61
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAAACATCTGGGAACAGATTTTACGAATACCCTTCATCTTGGAAATAATTAATGCAGTTCCCTTCATTATCTCA
Seq A exon
ATATTCTGGCCTTCCTTAAGGAATCTATTTGTCCCAGTCTTTCTGAACTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATT
Seq C2 exon
AATGATCTACACAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTAATATCTACATTACTATGCCTTATCTTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACAGATTTTACGAATACCCT
R:
CAGGTGAAGATAAGGCATAGTAATGT
Band lengths:
161-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)