RnoEX0046242 @ rn6
Exon Skipping
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57256246-57266236:+
Coord C1 exon
chr13:57256246-57256320
Coord A exon
chr13:57257410-57257493
Coord C2 exon
chr13:57266142-57266236
Length
84 bp
Sequences
Splice sites
3' ss Seq
GTATTTTGCTTATTTTTCAGATA
3' ss Score
9.71
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGGAATATCTGGGAGCAGATTTTACGAGTTCCATTCATCTTGGAAATAATCAATGCAGTTCCCTTCATCATCTCA
Seq A exon
ATATTCTGGCCTACGTTAAGAAATCTCTTTGTTCCAGTTTTTCTAAATTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATT
Seq C2 exon
AATGATCTTCATCGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTCTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312-'6-11,'6-9,7-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAATATCTGGGAGCAGATTT
R:
CAAGTGAAGATAAGGCATAGTAAAGT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]