DmeEX6009755 @ dm6
Exon Skipping
Gene
FBgn0261698 | CG42732
Description
The gene slowpoke 2 is referred to in FlyBase by the symbol DmelSLO2 (CG42732, FBgn0261698). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (9 unique). Gene sequence location is 2R:10322195..10416996. Its molecular function is described by: calcium-activated potassium channel activity; outward rectifier potassium channel activity; intracellular sodium activated potassium channel activity. It is involved in the biological process described with: potassium ion transmembrane transport; potassium ion transport. 21 alleles are reported. The phenotypes of these alleles manifest in: mesothoracic tergum; ganglion mother cell; trichogen cell. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; some die during P-stage.
Coordinates
chr2R:10338870-10339240:-
Coord C1 exon
chr2R:10339166-10339240
Coord A exon
chr2R:10339026-10339109
Coord C2 exon
chr2R:10338870-10338964
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGCGGTGTTGATCCTTTCAGATT
3' ss Score
7.24
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
Exon sequences
Seq C1 exon
GGCAACATCTGGCAGCAGATACTCTCCTTTCACTTTATACTAGAATTAGTAACGACAATACCCTTTGCACTTACG
Seq A exon
ATTGTCCATCCCCCGCTAAGAAATTTATTCATTCCCATTTTCCTCAATTGCTGGCTGGCCAAGCGATCGCTGGAGAACATGTTT
Seq C2 exon
AATGACCTCCATCGCGCCATGCAAAAGTCCCAGTCAGCCCTCTCCCAGCAGTTGACCATTCTATCAGCCACACTGCTGTGTTTGGTCTTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261698-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(13.9=34.4)
Main Inclusion Isoform:
FBpp0292199
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0292200, FBpp0292201, FBpp0292202, FBpp0297088, FBpp0302905, FBpp0302908, FBpp0302970, FBpp0303466
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACATCTGGCAGCAGATACT
R:
TCGTGAAGACCAAACACAGCA
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)