HsaEX6063946 @ hg38
Exon Skipping
Gene
ENSG00000107147 | KCNT1
Description
potassium sodium-activated channel subfamily T member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr9:135757156-135758508:+
Coord C1 exon
chr9:135757156-135757230
Coord A exon
chr9:135757298-135757381
Coord C2 exon
chr9:135758414-135758508
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGACCTGTCCCCTTCACAGATC
3' ss Score
11.31
5' ss Seq
ATTGTAAGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
GGCAACATCTGGGAGCAGATCTTCCGCGTGTCCTTCGTCCTGGAGATGATCAACACTCTGCCCTTCATCATCACG
Seq A exon
ATCTTCTGGCCGCCGCTGCGGAACCTGTTCATCCCCGTCTTTCTGAACTGCTGGCTGGCCAAGCACGCGCTGGAAAACATGATT
Seq C2 exon
AATGACTTCCACCGTGCCATCCTGCGGACACAGTCAGCCATGTTCAACCAGGTCCTCATCCTCTTCTGCACCCTGCTGTGCCTCGTTTTCACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107147-'20-30,'20-28,21-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(12.5=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCTGGGAGCAGATC
R:
GTGAAAACGAGGCACAGCAGG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains