BtaEX6047097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103406868-103407790:+
Coord C1 exon
chr11:103406868-103406942
Coord A exon
chr11:103407010-103407093
Coord C2 exon
chr11:103407696-103407790
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTGACCCGTCTCCTCCGCAGATA
3' ss Score
11.27
5' ss Seq
ATCGTAAGC
5' ss Score
6.08
Exon sequences
Seq C1 exon
GGCAACATCTGGGAGCAGATCTTCCGCGTGTCCTTCATCCTGGAGATGATCAACACGCTGCCCTTCATCATCACG
Seq A exon
ATATTCTGGCCGCCGCTGCGGAACCTGTTCATCCCCGTGTTTCTGAACTGCTGGCTGGCCAAGCACGCCCTGGAGAACATGATC
Seq C2 exon
AACGACTTCCACCGTGCCATCCTGCGCTCGCAGTCGGCCATGTTCAATCAGGTCCTCATCCTCTTCTGCACCTTGCTGTGCCTGGTCTTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(13.6=34.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCTGGGAGCAGATC
R:
GTGAAGACCAGGCACAGCAAG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]