RnoEX0046212 @ rn6
Exon Skipping
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3340148-3341051:+
Coord C1 exon
chr3:3340148-3340222
Coord A exon
chr3:3340290-3340373
Coord C2 exon
chr3:3340957-3341051
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCCCGCACACCACAGGTC
3' ss Score
8.69
5' ss Seq
ATCGTAAGT
5' ss Score
10.44
Exon sequences
Seq C1 exon
GGCAACATCTGGGAGCAGATATTCCATGTGTCTTTCGTCTTGGAGATGATCAACACACTGCCCTTCATCATCACG
Seq A exon
GTCTTCTGGCCACCTCTCCGGAACCTGTTCATCCCTGTGTTTCTCAACTGCTGGCTGGCCAAGCACGCCCTGGAGAACATGATC
Seq C2 exon
AATGACTTCCACCGTGCCATCCTGCGCACACAGTCAGCCATGTTCAACCAGGTGCTCATCCTGTTCTGCACCCTGCTGTGCCTGGTCTTCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283-'10-16,'10-15,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(13.6=34.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCTGGGAGCAGATA
R:
GTGAAGACCAGGCACAGCAG
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]