DreEX0005323 @ danRer10
Exon Skipping
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64827361-64833304:+
Coord C1 exon
chr5:64827361-64827435
Coord A exon
chr5:64830036-64830119
Coord C2 exon
chr5:64833210-64833304
Length
84 bp
Sequences
Splice sites
3' ss Seq
TATTTATGGCTTTTTTGCAGATC
3' ss Score
8.98
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGCAACATTTGGGAACAGATTTTCCAAATCTCCTTCATCATTGAGATGATCAATACAGTGCCATTCATAATTACA
Seq A exon
ATCTTTTGGCCTCCGCTTAGGAACATATTTGTTCCTGTATTTCTTAACTGTTGGCTTGCCAAATCAGCGCTGGAGAATATGATT
Seq C2 exon
AATGATCTCCATCGTGCCATCCAGCGCACACACTCTGCCATGTTCAACCAGGTCCTCATCCTGATCTGTACACTGCTCTGTCTGGTCTTCACCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868-'7-9,'7-8,8-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(11.4=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATTTGGGAACAGATT
R:
GGTGAAGACCAGACAGAGCAG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]