GgaEX6015484 @ galGal3
Exon Skipping
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8919642-8920296:-
Coord C1 exon
chr17:8920222-8920296
Coord A exon
chr17:8919947-8920030
Coord C2 exon
chr17:8919642-8919736
Length
84 bp
Sequences
Splice sites
3' ss Seq
GGTAACTCTTCCTTTTGTAGATA
3' ss Score
8.18
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GGGAACATCTGGGAGCAGATTTTCCGCATTTCGTTCATCCTTGAGATGATCAACACAGTGCCCTTCATTATCACA
Seq A exon
ATATTTTGGCCTCCTCTGCGGAATTTGTTCATCCCTGTCTTTCTGAACTGCTGGCTCGCCAAGTACGCCCTGGAGAACATGATA
Seq C2 exon
AATGACCTGCACCGTGCCATCCAGAGGACCCAGTCTGCCATGTTCAACCAGGTGCTCATCCTCATCTGCACCCTCCTGTGTCTCGTCTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(12.5=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAACATCTGGGAGCAGATT
R:
CCAGTGAAGACGAGACACAGG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]