BtaEX6067661 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016729 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr16:6408986-6413813:+
Coord C1 exon
chr16:6408986-6409063
Coord A exon
chr16:6410268-6410351
Coord C2 exon
chr16:6413719-6413813
Length
84 bp
Sequences
Splice sites
3' ss Seq
AGTTTTGATTTGTCTTCCAGATA
3' ss Score
8.32
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
AAGGGAAACATCTGGGAACAGATTTTACGAATACCCTTCATCTTGGAAATAATTAATGCGGTTCCCTTCATTATCTCA
Seq A exon
ATATTCTGGCCTTCCTTAAGAAATCTATTTGTCCCAGTTTTTCTAAACTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATT
Seq C2 exon
AATGATCTACACAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTAATATCTACATTACTTTGCCTTATCTTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016729-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACAGATTTTACGAATACCCT
R:
CAGGTGAAGATAAGGCAAAGTAATGT
Band lengths:
161-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]