MmuEX6027925 @ mm9
Exon Skipping
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:142271685-142279672:+
Coord C1 exon
chr1:142271685-142271759
Coord A exon
chr1:142272930-142273013
Coord C2 exon
chr1:142279578-142279672
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTGCTTATTTTTCAGATA
3' ss Score
11.41
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAAATATCTGGGAGCAGATTTTACGAATTCCATTCATCTTGGAAATAATCAATGCAGTCCCCTTCATCATCTCA
Seq A exon
ATATTCTGGCCCACCTTAAGAAATCTATTTGTTCCAGTTTTTCTAAATTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATT
Seq C2 exon
AATGATCTCCATAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTGATATCTACTTTACTATGCCTTATCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726-'5-7,'5-5,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATATCTGGGAGCAGATTTTACG
R:
CAAGTGAAGATAAGGCATAGTAAAGT
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: