HsaEX6035703 @ hg38
Exon Skipping
Gene
ENSG00000162687 | KCNT2
Description
potassium sodium-activated channel subfamily T member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr1:196465293-196469068:-
Coord C1 exon
chr1:196468994-196469068
Coord A exon
chr1:196467703-196467786
Coord C2 exon
chr1:196465293-196465387
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTCCAGATA
3' ss Score
11.61
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAAACATCTGGGAACAGATTTTACGAATACCCTTCATCTTGGAAATAATTAATGCAGTTCCCTTCATTATCTCA
Seq A exon
ATATTCTGGCCTTCCTTAAGGAATCTATTTGTCCCAGTCTTTCTGAACTGTTGGCTTGCCAAACATGCCTTGGAAAATATGATT
Seq C2 exon
AATGATCTACACAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATCAAGTTTTGATTTTAATATCTACATTACTATGCCTTATCTTCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162687-'8-13,'8-12,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAACAGATTTTACGAATACCCT
R:
CAGGTGAAGATAAGGCATAGTAATGT
Band lengths:
161-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains