GgaEX6043522 @ galGal3
Exon Skipping
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2749219-2750523:+
Coord C1 exon
chr8:2749219-2749293
Coord A exon
chr8:2749755-2749838
Coord C2 exon
chr8:2750429-2750523
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTGTTCATTTTTTCCTTCAGATT
3' ss Score
11.55
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
Exon sequences
Seq C1 exon
GGAAATATCTGGGAACAAATTCTGCGAATACCCTTCCTCCTGGAAATAATAAATGCTGTCCCATTCATCATTACG
Seq A exon
ATTTTCTGGCCAGTCCTAAGAAACCTGTTTATTCCTGTATTTTTAAACTGTTGGCTAGCAAAGCATGCTTTGGAGAATATGATT
Seq C2 exon
AATGACCTTCACAGAGCCATCCAACGTACACAGTCTGCAATGTTTAACCAAGTTCTCATTTTAATATCCACCTTACTGTGTCTTATCTTCACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(16.7=43.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATATCTGGGAACAAATTCTGCG
R:
AGTGAAGATAAGACACAGTAAGGTGG
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]