DreEX6025907 @ danRer10
Exon Skipping
Gene
ENSDARG00000075812 | kcnt2
Description
potassium channel, subfamily T, member 2 [Source:ZFIN;Acc:ZDB-GENE-130530-783]
Coordinates
chr2:12287625-12293847:-
Coord C1 exon
chr2:12293773-12293847
Coord A exon
chr2:12289000-12289083
Coord C2 exon
chr2:12287625-12287719
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTTGTTGTAACAGATT
3' ss Score
9.26
5' ss Seq
GTTGTGAGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GGTAACATATTGCAGCAGGTACTTCAAATGGCGTTTATCTTGGAATTGATTGACACCGTGCCTTTTGTAATTGGA
Seq A exon
ATTTTTTATCAATCCTTCCGGAAGCTCTTCGTTCCTGTTTTTCTGAACTGCTGGCTGGCAAAACGTGCTTTGGAAAGCACGGTT
Seq C2 exon
AATGATCTTCATCGAGCTATTCACCGGACACAGTCAGCCATGTTCAATCAGGTCCTCATGCTCATCTCCACCATTGTCTGCCTCATTTTCACTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075812-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0788511=Ion_trans_2=PU(15.5=40.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACATATTGCAGCAGGTACT
R:
AGTGAAAATGAGGCAGACAATGGT
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]